Affinage · Toxoplasma gondii

PDX2

putative glutamine amidotransferase subunit pdxt · UniProt S8GP52

Annotated
2026-09-10
1 papers in source corpus 1 papers cited in narrative 1 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

PDX2 is the putative glutamine amidotransferase subunit of the PDX1/PDX2-type pyridoxal phosphate (PLP) synthase complex that mediates de novo biosynthesis of vitamin B6 in Toxoplasma gondii (PMID:17222923). Its identification established that this parasite possesses an intact de novo PLP biosynthetic pathway rather than relying solely on salvage (PMID:17222923). Beyond this pathway-level assignment, no further mechanistic detail on PDX2 has been characterized in the available corpus.

Mechanistic history

Synthesis pass · year-by-year structured walk · 1 step
  1. 2006 Medium

    Whether Toxoplasma gondii could synthesize vitamin B6 de novo was resolved by identifying the components of its PLP synthase system, placing PDX2 as the glutamine amidotransferase subunit of this pathway.

    Evidence Biochemical characterization of the de novo PLP biosynthesis pathway in T. gondii, identifying PDX2 as a component of the PLP synthase complex

    PMID:17222923

    Open questions at the time
    • Direct enzymatic glutaminase activity of PDX2 not demonstrated
    • Physical interaction/stoichiometry with the PDX1 synthase subunit not established
    • No structural model or catalytic residue assignment

Mechanism profile

Synthesis pass · controlled-vocabulary classification
Partners
Complex memberships
PLP synthase complex (PDX1/PDX2-type)

Evidence

Reading pass · 1 per-paper finding extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2006 Toxoplasma gondii generates pyridoxal phosphate (PLP/vitamin B6) de novo via a pathway that includes PDX2 (the putative glutamine amidotransferase subunit), establishing that this parasite possesses the PDX1/PDX2-type PLP synthase system for de novo vitamin B6 biosynthesis. Biochemical characterization of the de novo PLP biosynthesis pathway in T. gondii, identifying the PDX2 glutamine amidotransferase subunit as a component of the PLP synthase complex Molecular and biochemical parasitology Medium 17222923

Source papers

Stage 0 corpus · 1 paper · ranked by NIH iCite citations
Year Title Journal Citations PMID
2006 The apicomplexan parasite Toxoplasma gondii generates pyridoxal phosphate de novo. Molecular and biochemical parasitology 15 17222923