Affinage · Toxoplasma gondii

CBS

cystathionine beta-synthase · UniProt A0A125YSJ9

Annotated
2026-09-08
4 papers in source corpus 4 papers cited in narrative 4 extracted findings

Mechanistic narrative

Synthesis pass · prose summary of the discoveries below

CBS in Toxoplasma gondii (TgCBS) is a pyridoxal 5'-phosphate (PLP)-dependent enzyme of the reverse transsulfuration pathway that catalyzes cystathionine biosynthesis and also generates hydrogen sulfide (H2S) (PMID:32887901). In β-replacement reactions it uses either serine or O-acetylserine together with homocysteine to form cystathionine via an aminoacrylate intermediate, and it preferentially produces H2S by condensing cysteine and homocysteine (PMID:32887901). Its substrate preference between serine and O-acetylserine is set by active-site residues S84, Y160, and Y246, with Y246 dominant in stabilizing the serine leaving group; the S84A/Y160F/Y246V triple mutant converts the enzyme into an O-acetylserine-exclusive (OCBS-like) form and lowers the pH optimum (PMID:37163386). Structurally, TgCBS lacks the N-terminal heme-binding domain of human CBS and assembles into a unique basket-like dimer while retaining two C-terminal CBS (Bateman module) domains (PMID:32887901, PMID:34194677). Unlike human CBS, TgCBS is not stimulated by S-adenosylmethionine and its Bateman module does not exert autoinhibitory control — removal by deletion, proteolysis, or thermal denaturation leaves activity, oligomerization, and stability unchanged — defining a distinct regulatory mechanism (PMID:32887901, PMID:35897745).

Mechanistic history

Synthesis pass · year-by-year structured walk · 4 steps
  1. 2020 High

    Establishing that T. gondii encodes a functional CBS answered whether the parasite runs a reverse transsulfuration pathway and revealed it uses a heme-independent, SAM-insensitive enzyme with dual cystathionine- and H2S-producing activities.

    Evidence biochemical characterization of recombinant TgCBS with multiple substrates, intermediate trapping, and SAM stimulation assays

    PMID:32887901

    Open questions at the time
    • In vivo role in parasite physiology and whether both activities matter for infection not tested
    • Kinetic contributions of the two C-terminal CBS domains not resolved
  2. 2021 High

    The crystal structure defined the architecture underlying TgCBS's heme independence, showing a basket-like dimer lacking the N-terminal heme domain and resembling the pathogenic human D444N conformation.

    Evidence X-ray crystallography with bound reaction intermediates, molecular dynamics, and activity assays of a catalytically intact deletion construct (Δ466-491)

    PMID:34194677

    Open questions at the time
    • Functional consequence of the D444N-like arrangement for catalysis not directly probed
    • Structure of the full Bateman module region not resolved
  3. 2022 High

    Testing whether the C-terminal Bateman module autoinhibits TgCBS as it does in human CBS established a novel regulatory mode in which the module is dispensable for activity control.

    Evidence deletion mutagenesis, limited proteolysis, and thermal denaturation, each assessed for activity, oligomerization, and thermal stability

    PMID:35897745

    Open questions at the time
    • Actual physiological function of the retained Bateman module unknown
    • Whether any ligand regulates TgCBS through this module not determined
  4. 2023 High

    Identifying S84, Y160, and Y246 as determinants of serine/O-acetylserine preference explained the molecular basis of TgCBS's dual-substrate capability and how it can be reprogrammed toward OCBS-like behavior.

    Evidence single and triple site-directed mutagenesis with activity assays, aminoacrylate trapping, and protein-aminoacrylate complex structures

    PMID:37163386

    Open questions at the time
    • Whether O-acetylserine is a physiologically relevant substrate in vivo not established
    • Relative flux through cystathionine versus H2S production in the cell not quantified

Open questions

Synthesis pass · forward-looking unresolved questions
  • The in vivo function of TgCBS in T. gondii metabolism, growth, and pathogenesis, and whether its distinct regulation is exploitable as a drug target, remain open.
  • No genetic knockout or conditional depletion characterized
  • No demonstrated contribution to virulence or metabolic phenotype in the parasite

Mechanism profile

Synthesis pass · controlled-vocabulary classification
Complex memberships
Homodimer (basket-like dimer architecture)

Evidence

Reading pass · 4 per-paper findings extracted from the source corpus
Year Finding Method Journal Conf PMIDs
2020 TgCBS catalyzes PLP-dependent β-replacement reactions using both serine and O-acetylserine as substrates (with homocysteine) to produce cystathionine via an aminoacrylate intermediate, and can also produce H2S preferentially via condensation of cysteine and homocysteine. Unlike human CBS, TgCBS activity is not stimulated by S-adenosylmethionine. TgCBS lacks a heme-binding domain but possesses two C-terminal CBS domains. Biochemical characterization of recombinant TgCBS: enzymatic assays, substrate specificity tests, intermediate trapping, SAM stimulation assays Scientific reports High 32887901
2021 Crystal structure of TgCBS (construct Δ466-491) was determined alone and in complex with reaction intermediates, revealing a unique basket-like dimer domain organization lacking an N-terminal heme-binding domain. Molecular dynamics analysis showed that the domain arrangement resembles the pathogenic D444N mutant of human CBS and is similar to CBS-type structures in yeast and bacteria such as Pseudomonas aeruginosa. The Δ466-491 construct retains the same catalytic activity as the native protein. X-ray crystallography, molecular dynamics simulation, activity assays of deletion construct Computational and structural biotechnology journal High 34194677
2022 In contrast with human CBS where removal or denaturation of the C-terminal Bateman module relieves autoinhibition and activates the enzyme, removal of the Bateman module in TgCBS by deletion mutagenesis, limited proteolysis, or thermal denaturation has no effect on its activity, oligomerization, or thermal stability. This establishes that TgCBS operates by a novel regulatory mechanism in which the Bateman module does not exert autoinhibitory control. Deletion mutagenesis, limited proteolysis, thermal denaturation, enzymatic activity assays, oligomerization analysis International journal of molecular sciences High 35897745
2023 Active-site residues S84, Y160, and Y246 control the serine/O-acetylserine substrate preference of TgCBS. The S84A/Y160F/Y246V triple mutant converts TgCBS into an O-acetylserine-exclusive enzyme (OCBS-like behavior) and shifts the pH optimum by ~1 unit lower. Y246 has the dominant role in stabilizing the leaving group of l-serine, while Y160 and S84 also contribute through H-bond stabilization of the aminoacrylate intermediate. Loss of all three hydroxyl groups prevents formation of a stable aminoacrylate with l-serine. Site-directed mutagenesis (single and triple mutants), enzymatic activity assays, aminoacrylate intermediate trapping, protein-aminoacrylate complex structure determination Proteins High 37163386

Source papers

Stage 0 corpus · 4 papers · ranked by NIH iCite citations
Year Title Journal Citations PMID
2020 Cystathionine β-synthase is involved in cysteine biosynthesis and H2S generation in Toxoplasma gondii. Scientific reports 26 32887901
2021 Structural insight into the unique conformation of cystathionine β-synthase from Toxoplasma gondii. Computational and structural biotechnology journal 10 34194677
2022 Insights into Domain Organization and Regulatory Mechanism of Cystathionine Beta-Synthase from Toxoplasma gondii. International journal of molecular sciences 8 35897745
2023 Key substrate recognition residues in the active site of cystathionine beta-synthase from Toxoplasma gondii. Proteins 3 37163386